List of Papers:

Segmenetation and Classification

A Unified Segmentation Method For Detecting Subcellular Compartments in Immunofluroscently Labeled Tissue Images; Ali Can, Musodiq Bello, Harvey E. Cline, Xiaodong Tao, Paulo Mendonca and Michael Gerdes
[Full Paper] [bibref] [pdf]

Segmentation Evaluation for Fluorescence Microscopy Images of Biological Objects; Shantanu Singh, Sundaresan Raman, Jens Rittscher, Raghu Machiraju
[Full Paper] [bibref] [pdf]

Learning to Detect Different Types of Cells under Phase Contrast Microscopy; Jiyan Pan, Takeo Kanade, Mei Chen
[Full Paper] [bibref] [pdf]

Analysis of Multiphoton Renal and Liver Microscopy Images: Preliminary Approaches to Segmentation and Registration; Kevin Lorenz, Francisco Serrano, Paul Salama, Edward Delp
[Full Paper] [bibref] [pdf]

Quantitative comparison of several basic automated segmentation algorithms for identifying the cell periphery - John Elliott, Alden Dima, James Filliben, Michael Halter, Anne Plant
[Abstract] [bibref] [pdf]

Cell Cycle Analysis and Tissue Structures

High-throughput high-resolution image analysis of the trypanosome cell cycle; Boguslaw Obara, Steven Kelly, Bill Wickstead, Keith Gull, David Gavaghan, Vicente Grau
[Abstract] [bibref] [pdf]

Serial Neural Network Classifier for Membrane Detection using a Filter Bank; Elizabeth Jurrus, Antonio Paiva, Shigeki Watanabe, Ross Whitaker, Erik Jorgensen, Tolga Tasdizen
[Full Paper] [bibref] [pdf]

(Computationally) Glancing at Biomedical Images - Hagit Shatkay, Dorothea Blostein
[Abstract] [bibref] [pdf]

Computational Framework for Controlled F-actin Stained Confocal Microscopy Image Simulation; Chi Cui, Joseph JaJa, Thomas Turbyville, John Beutler, Stephen Lockett
[Full Paper] [bibref] [pdf]

Dynamic Processes

A dynamic texture approach to semi-automatic thrombosis segmentation in in-vivo microscopic video-sequences; Nicolas Brieu, Jovana Serbanovic-Canic, Ana Cvejic, Derek Stemple, Willem Ouwehand, Nassir Navab, Martin Groher
[Full Paper] [bibref] [pdf]

GoFigure2 Image Analysis: Reconstructing Zebrafish Cell Lineages; Kishore Mosaliganti, Arnaud Gelas, Lydie Souhait, Alexandre Gouaillard, Nikolaus Obholzer, Ramil Noche, Sean Megason
[Abstract] [bibref] [pdf]

Use of live cell microscopy to follow the temporal regulation of tenascin-C gene expression; Michael Halter, Joseph Chalfoun, Antonio Cardone, Benjamin Stottrup, Alessandro Tona, Alden Dima, Anne Plant, John Elliott
[Abstract] [bibref] [pdf]

Performance Evaluation of Approaches for Tracking Multiple Virus Particles in Fluorescence Microscopy Image Sequences; William Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
[Full Paper] [bibref] [pdf]

Atlas Based Imaging

Analyzing Gene Expression Data; Ioannis A. Kakadiaris, James Carson, Tao Ju
[Invited Talk]

Boundary Detection and Image Segmentation using Convolutional Networks; Viren Jain
[Invited Talk]

Improving EM reconstruction by Incorporating Optical Data; Louis Scheffer
[Invited Talk]

3D Fruitfly Brain Image Analysis Pipeline for Building High-Resolution Digital Neuronal Atlases of Fly Nervous Systems; Hanchuan Peng
[Inited Talk]