List of Papers:

Segmenetation and Classification

A Unified Segmentation Method For Detecting Subcellular Compartments in Immunofluroscently Labeled Tissue Images; Ali Can [bibref] [pdf]

Segmentation Evaluation for Fluorescence Microscopy Images of Biological Objects; Shantanu Singh, Jens Rittscher, Raghu Machiraju [bibref] [pdf]

Learning to Detect Different Types of Cells under Phase Contrast Microscopy; Jiyan Pan, Takeo Kanade, Mei Chen [bibref] [pdf]

Analysis of Multiphoton Renal and Liver Microscopy Images: Preliminary Approaches to Segmentation and Registration - Kevin Lorenz, Francisco Serrano, Paul Salama, Edward Delp [bibref] [pdf]

Quantitative comparison of several basic automated segmentation algorithms for identifying the cell periphery - John Elliott, Alden Dima, James Filliben, Michael Halter, Anne Plant [bibref] [pdf]
A three-dimensional resolution measure for optical microscopy - Jerry Chao, Sripad Ram, Elizabeth Ward, Raimund Ober [bibref] [pdf]

Cell Cycle Analysis and Tissue Structures

High-throughput high-resolution image analysis of the trypanosome cell cycle; Boguslaw Obara, Steven Kelly, Bill Wickstead, Keith Gull, David Gavaghan, Vicente Grau [bibref] [pdf]

Serial Neural Network Classifier for Membrane Detection using a Filter Bank; Elizabeth Jurrus, Antonio Paiva, Shigeki Watanabe, Ross Whitaker, Erik Jorgensen, Tolga Tasdizen [bibref] [pdf]

Optical processing of cell and tissue structure - Nada Boustany [bibref] [pdf]

Dynamic Processes

A dynamic texture approach to semi-automatic thrombosis segmentation in in-vivo microscopic video-sequences; Nicolas Brieu, Jovana Serbanovic-Canic, Ana Cvejic, Derek Stemple, Willem Ouwehand, Nassir Navab, Martin Groher [bibref] [pdf]

GoFigure2 Image Analysis: Reconstructing Zebrafish Cell Lineages; Kishore Mosaliganti, Arnaud Gelas, Lydie Souhait, Alexandre Gouaillard, Nikolaus Obholzer, Ramil Noche, Sean Megason [bibref] [pdf]

Use of live cell microscopy to follow the temporal regulation of tenascin-C gene expression; Michael Halter, Joseph Chalfoun, Antonio Cardone, Benjamin Stottrup, Alessandro Tona, Alden Dima, Anne Plant, John Elliott [bibref] [pdf]

Performance Evaluation of Approaches for Tracking Multiple Virus Particles in Fluorescence Microscopy Image Sequences; William Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr [bibref] [pdf]

Atlas Based Imaging

Analyzing Gene Expression Data; Ioannis A. Kakadiaris1, James Carson, Tao Ju [bibref] [pdf]

Boundary Detection and Image Segmentation using Convolutional Networks Viren Jain [bibref] [pdf]

Improving EM reconstruction by Incorporating Optical Data - Louis Scheffer [bibref] [pdf]

3D Fruitfly Brain Image Analysis Pipeline for Building High-Resolution Digital Neuronal Atlases of Fly Nervous Systems - Hanchuan Peng [bibref] [pdf]

Cancer Imaging

Breast Cancer Diagnostics Based On Interphase Spatial Genome Positioning; Karen Meaburn, Prabhakar Gudla, Sameena Khan, Kaustav Nandy, Stephen Lockett, Tom Misteli [bibref] [pdf]

Improving Classification of Head and Neck Squamous Cell Carcinoma using Knowledge Based Features; Yachna Sharma, Syed Raza, Qaiser Chaudry, Koon Kong, Susan Muller, Zhuo (Georgia) Chen, May Wang [bibref] [pdf]

Evolution of an assay for inhibitors of Botulinum neurotoxin A: from model system to high content - Gordon Ruthel [bibref] [pdf]

Development of Image Based Biometrics for Quantitative Description of the Early Network Formed by Endothelial Cells in in vitro Angiogenesis Culture Model - De Chen, Prabhakar Gudla, Jack Collins, Enrique Zudaire Uban, Changge Fang, Frank Cuttitta, Stephen Lockett [bibref] [pdf]

Malignancy Detection in Fine-Needle Aspiration Biopsy of the Thyroid using Multispectral Microscopy and Bag-of-Features Xuqing Wu, Shishir Shah [bibref] [pdf]